Plot bootstrap enrichment analysis

Usage

barplot_MSEA_boot(
  object,
  min.annotations = 2,
  q.value.cutoff = 0.1,
  bootstrap.fraction.cutoff = 0.5,
  by.statistic = "ES"
)

Arguments

object: A S2IsoMEr object after enrichment analysis.
min.annotations: An integer describing the minimal number of annotations each term should include
q.value.cutoff: A numeric between 0 and 1. Only terms with q-values lower than this value will be displayed.
bootstrap.fraction.cutoff: A numeric between 0 and 1 (default = 0.5), indicating the minimal fraction that the metabolite set is present in all bootstrap iterations.
by.statistic: A character indicating how the x-axis will be arranged. Can be either 'ES' (enrichment score) or 'q.value' (default).

Value

A ggplot2 object.

Examples

if (FALSE) { # \dontrun{
data("example_MSEA_obj")
p = barplot_MSEA_boot(object = example_MSEA_obj,
      q.value.cutoff = 0.2, by.statistic = "ES")
} # }