Package index
-
Load_background() - Load enrichment background
-
Run_bootstrap_MSEA() - Run Bootstrapped Metabolite Set Enrichment Analysis (MSEA)
-
Run_bootstrap_ORA() - Wrapper function for Bootstrap Over-Representation Analysis (ORA)
-
Run_enrichment() - Run Metabolite/Lipids enrichment analysis for single cell metabolomics
-
Run_simple_MSEA() - Run Simple Metabolite Set Enrichment Analysis (MSEA)
-
Run_simple_ORA() - Wrapper function for Simple Over-Representation Analysis (ORA)
-
barplot_MSEA_boot() - Plot bootstrap enrichment analysis
-
barplot_ORA_boot() - Bar Plot for ORA Bootstrapped Results
-
barplot_ORA_simple() - Bar Plot for Simple ORA Results
-
build_iso_bg() - Build Isomer/Isobar Background
-
calc_LFC_scmat() - Calculate Log Fold Change (LFC) from Single-Cell Metabolomics Matrix
-
compare_metabo_distr() - Plot intensity distribution of metabolite across conditions
-
decouple_ORA_wrapper() - Run ORA Analysis with Optional Bootstrapping
-
dotplot_ORA() - Dot Plot for Over-Representation Analysis (ORA) Results
-
get_TP_markers_per_Term() - Get intersection between term and query for a Specific Term
-
get_metabo_iso() - Get Metabolite Isomers and Isobars
-
initEnrichment() - Generate S2IsoMEr enrichment object
-
map_TP_markers_to_ions() - Map True Positive Markers to Input Ions from single cell matrix.
-
metabo_bootstrap() - Perform Bootstrap Sampling on Metabolite Annotations
-
metap_sumlog_pvals() - Combine p-values Using the Sum of Logs Method
-
passed_filters_per_term() - Report filters applied to bootstrap-based enrichment results
-
plot_MSEA_Multi_cond() - Plot Heatmap of MSEA Results Across Multiple Conditions
-
rankScore() - Rank metabolites for S2IsoMEr enrichment object
-
ridge_bootstraps() - Ridge Plot of Bootstrap Enrichment Results for Terms of Interest
-
setConditions() - Set conditions for enrichment analysis
-
simple_fgsea() - Run simple fGSEA enrichment